XlinkCyNET
XlinkCyNET is an open-source Java plugin that generates residue-to-residue connections provided by XL-MS in protein interaction networks. It provides an interactive interface for the exploration of cross-links and offers various options to display protein domains. XlinkCyNET works well in complex networks containing thousands of proteins.
Features
Visualize protein-protein interaction network based on cross-linking mass spectrometry data
Apply residue-to-residue connection layout to Cytoscape interaction network
Annotate protein domains of all proteins in the network
Map cross-links on high-resolution structures through PyMOL
Downloads
https://apps.cytoscape.org/apps/xlinkcynet